galaxyproject/galaxy-mcp

latest · 1.3.0

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

GitHub: galaxyproject/galaxy-mcp
PyPI: galaxy-mcp
MCP registry: io.github.galaxyproject/galaxy-mcp

Install

Needs env vars: GALAXY_URL, GALAXY_API_KEY — replace the <placeholders> with your values.

claude mcp add io-github-galaxyproject-galaxy-mcp --env GALAXY_URL=<GALAXY_URL> --env GALAXY_API_KEY=<GALAXY_API_KEY> -- uvx galaxy-mcp

/mcp confirms it's connected.

Install

Or add it manually in ~/.cursor/mcp.json:

{
  "mcpServers": {
    "io-github-galaxyproject-galaxy-mcp": {
      "command": "uvx",
      "args": [
        "galaxy-mcp"
      ],
      "env": {
        "GALAXY_URL": "<GALAXY_URL>",
        "GALAXY_API_KEY": "<GALAXY_API_KEY>"
      }
    }
  }
}

In claude_desktop_config.json (Settings → Developer → Edit Config), then restart:

{
  "mcpServers": {
    "io-github-galaxyproject-galaxy-mcp": {
      "command": "uvx",
      "args": [
        "galaxy-mcp"
      ],
      "env": {
        "GALAXY_URL": "<GALAXY_URL>",
        "GALAXY_API_KEY": "<GALAXY_API_KEY>"
      }
    }
  }
}

Config entry, any MCP client:

{
  "command": "uvx",
  "args": [
    "galaxy-mcp"
  ],
  "env": {
    "GALAXY_URL": "<GALAXY_URL>",
    "GALAXY_API_KEY": "<GALAXY_API_KEY>"
  }
}

Community score

Community44/ 100

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What the web says

Ecosystem baseline44/ 100

Objective public usage & activity (formula v3) — the community score's web-signals input, and its own sort.

GitHubsource ↗

GitHub stars · 18 days ago: ★ 39
Contributors · 1 month ago: 14
Last commit · 18 days ago: today
Issue close rate · 18 days ago: 24%
Release cadence · 18 days ago: about every 9 days
Latest release · 18 days ago: v1.10.0
License · 18 days ago: MIT

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Listed on

Glama · 8 days ago: Listed ↗

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Version history1

1.3.0release date unknown

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Details

Transport: stdio
Status: listed
Source: Imported from the MCP registry
Repository: source ↗